20 items (Pan troglodytes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNOT10	CCR4-NOT transcription complex subunit 10. (804 aa)
	CNOT6	CCR4-NOT transcription complex, subunit 6. (557 aa)
	CNOT9	CCR4-NOT transcription complex subunit 9. (331 aa)
	LRRC27	LRRC27 isoform 3. (530 aa)
	CNOT1	CCR4-NOT transcription complex, subunit 1. (2383 aa)
	ZFP36	Zinc finger protein 36, C3H type, homolog. (332 aa)
	CNOT11	CCR4-NOT transcription complex subunit 11. (510 aa)
	CNOT6L	CCR4-NOT transcription complex subunit 6 like. (562 aa)
	CNOT8	CCR4-NOT transcription complex, subunit 8. (292 aa)
	CNOT4	CCR4-NOT transcription complex subunit 4. (712 aa)
	CNOT3	CCR4-NOT transcription complex, subunit 3. (753 aa)
	TNKS1BP1	Tankyrase 1 binding protein 1. (1729 aa)
	CNOT2	CCR4-NOT transcription complex, subunit 2. (550 aa)
	CK820_G0038659	CNOT7 isoform 10. (245 aa)
	ENSPTRP00000091556	annotation not available (277 aa)
	ENSPTRP00000090981	annotation not available (244 aa)
	CK820_G0044476	CNOT6 isoform 4. (464 aa)
	CNOT3-2	CCR4-NOT transcription complex subunit 3. (753 aa)
	CPEB3	Cytoplasmic polyadenylation element binding protein 3. (716 aa)
	CNOT7	CCR4-NOT transcription complex, subunit 7. (285 aa)

Your Current Organism:

Pan troglodytes

NCBI taxonomy Id: 9598
Other names: P. troglodytes, chimpanzee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CK820_G0038659	CK820_G0044476	ENSPTRP00000061148	ENSPTRP00000087154	CNOT7 isoform 10.	CNOT6 isoform 4.	0.963
CK820_G0038659	CNOT1	ENSPTRP00000061148	ENSPTRP00000013973	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 1.	0.979
CK820_G0038659	CNOT10	ENSPTRP00000061148	ENSPTRP00000072261	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 10.	0.960
CK820_G0038659	CNOT11	ENSPTRP00000061148	ENSPTRP00000021054	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 11.	0.956
CK820_G0038659	CNOT2	ENSPTRP00000061148	ENSPTRP00000057878	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 2.	0.969
CK820_G0038659	CNOT3	ENSPTRP00000061148	ENSPTRP00000040630	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 3.	0.951
CK820_G0038659	CNOT3-2	ENSPTRP00000061148	ENSPTRP00000086621	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 3.	0.951
CK820_G0038659	CNOT4	ENSPTRP00000061148	ENSPTRP00000033796	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 4.	0.937
CK820_G0038659	CNOT6	ENSPTRP00000061148	ENSPTRP00000069359	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 6.	0.976
CK820_G0038659	CNOT6L	ENSPTRP00000061148	ENSPTRP00000027832	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 6 like.	0.963
CK820_G0038659	CNOT7	ENSPTRP00000061148	ENSPTRP00000078280	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 7.	0.543
CK820_G0038659	CNOT8	ENSPTRP00000061148	ENSPTRP00000029810	CNOT7 isoform 10.	CCR4-NOT transcription complex, subunit 8.	0.797
CK820_G0038659	CNOT9	ENSPTRP00000061148	ENSPTRP00000062618	CNOT7 isoform 10.	CCR4-NOT transcription complex subunit 9.	0.971
CK820_G0038659	CPEB3	ENSPTRP00000061148	ENSPTRP00000079507	CNOT7 isoform 10.	Cytoplasmic polyadenylation element binding protein 3.	0.432
CK820_G0038659	ENSPTRP00000090981	ENSPTRP00000061148	ENSPTRP00000090981	CNOT7 isoform 10.	annotation not available	0.547
CK820_G0038659	ENSPTRP00000091556	ENSPTRP00000061148	ENSPTRP00000091556	CNOT7 isoform 10.	annotation not available	0.544
CK820_G0038659	LRRC27	ENSPTRP00000061148	ENSPTRP00000005408	CNOT7 isoform 10.	LRRC27 isoform 3.	0.640
CK820_G0038659	TNKS1BP1	ENSPTRP00000061148	ENSPTRP00000046345	CNOT7 isoform 10.	Tankyrase 1 binding protein 1.	0.459
CK820_G0038659	ZFP36	ENSPTRP00000061148	ENSPTRP00000018802	CNOT7 isoform 10.	Zinc finger protein 36, C3H type, homolog.	0.534
CK820_G0044476	CK820_G0038659	ENSPTRP00000087154	ENSPTRP00000061148	CNOT6 isoform 4.	CNOT7 isoform 10.	0.963