STRINGSTRING
AEH23308.1 AEH23308.1 cas1 cas1 cas2 cas2 AEH23203.1 AEH23203.1 AEH23202.1 AEH23202.1 AEH23201.1 AEH23201.1 AEH23200.1 AEH23200.1 AEH23199.1 AEH23199.1 AEH23197.1 AEH23197.1 cas2-2 cas2-2 cas1-2 cas1-2 AEH23310.1 AEH23310.1 AEH23309.1 AEH23309.1 AEH23307.1 AEH23307.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AEH23308.1TIGRFAM: CRISPR-associated protein Cas5, Tneap type; CRISPR-associated protein Cas5; KEGG: cow:Calow_0070 crispr-associated protein cas5 family. (277 aa)
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (291 aa)
cas2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (86 aa)
AEH23203.1KEGG: toc:Toce_0530 CRISPR-associated protein, MJ1666 family; TIGRFAM: CRISPR-associated protein, MJ1666; PFAM: CRISPR-associated protein DxTHG. (455 aa)
AEH23202.1PFAM: Protein of unknown function DUF2276; KEGG: tam:Theam_0867 CRISPR-associated protein Cas6. (283 aa)
AEH23201.1KEGG: saf:SULAZ_1607 crispr-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated protein, TM1807; PFAM: Protein of unknown function DUF324. (396 aa)
AEH23200.1KEGG: saf:SULAZ_1605 crispr-associated RAMP protein, Csm4 family; TIGRFAM: Protein of unknown function DUF314; PFAM: Protein of unknown function DUF324. (321 aa)
AEH23199.1KEGG: saf:SULAZ_1604 crispr-associated RAMP protein, Csm3 family; TIGRFAM: CRISPR-associated RAMP Csm3; PFAM: Protein of unknown function DUF324. (286 aa)
AEH23197.1TIGRFAM: CRISPR-associated protein Csm1; KEGG: saf:SULAZ_1602 crispr-associated protein, Csm1 family. (803 aa)
cas2-2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (93 aa)
cas1-2CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (324 aa)
AEH23310.1CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (169 aa)
AEH23309.1TIGRFAM: Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: cow:Calow_0071 crispr-associated helicase cas3; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal. (842 aa)
AEH23307.1KEGG: tal:Thal_0005 CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6; PFAM: Protein of unknown function DUF57. (243 aa)
Your Current Organism:
Thermodesulfobacterium geofontis
NCBI taxonomy Id: 795359
Other names: T. geofontis OPF15, Thermodesulfobacterium geofontis OPF15, Thermodesulfobacterium sp. OPF15
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