(28 nodes) Clathrin-coated pit network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z4L5_BRAFL	MFS domain-containing protein. (461 aa)
	C3Z473_BRAFL	Uncharacterized protein. (207 aa)
	C3Z3W7_BRAFL	TSNAXIP1_N domain-containing protein. (582 aa)
	C3Z3J8_BRAFL	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	C3Z1J9_BRAFL	Uncharacterized protein. (559 aa)
	C3Z1G4_BRAFL	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (950 aa)
	C3YZV8_BRAFL	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (248 aa)
	C3YXU9_BRAFL	ENTH domain-containing protein. (623 aa)
	C3YTZ4_BRAFL	Uncharacterized protein. (541 aa)
	C3ZLV4_BRAFL	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (351 aa)
	C3ZLK1_BRAFL	Uncharacterized protein. (160 aa)
	C3ZLK0_BRAFL	Uncharacterized protein. (1250 aa)
	C3XTE8_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1237 aa)
	C3XXX7_BRAFL	PID domain-containing protein. (128 aa)
	C3XZS0_BRAFL	Uncharacterized protein. (957 aa)
	C3Y338_BRAFL	Uncharacterized protein. (1291 aa)
	C3Y4I4_BRAFL	Uncharacterized protein. (333 aa)
	C3Y684_BRAFL	Uncharacterized protein. (645 aa)
	C3ZN03_BRAFL	Uncharacterized protein. (538 aa)
	C3Y985_BRAFL	Uncharacterized protein. (282 aa)
	C3YAV7_BRAFL	VPS10 domain-containing protein. (246 aa)
	C3YBS3_BRAFL	Uncharacterized protein. (875 aa)
	C3YIJ5_BRAFL	MHD domain-containing protein. (672 aa)
	C3YIJ6_BRAFL	FCH domain-containing protein. (457 aa)
	C3YLS4_BRAFL	Uncharacterized protein. (778 aa)
	C3YMK9_BRAFL	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (1679 aa)
	C3ZAE2_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (707 aa)
	C3Z9A8_BRAFL	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1533 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTE8_BRAFL	C3XXX7_BRAFL	C3XTE8	C3XXX7	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	PID domain-containing protein.	0.957
C3XTE8_BRAFL	C3YZV8_BRAFL	C3XTE8	C3YZV8	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.939
C3XTE8_BRAFL	C3Z3W7_BRAFL	C3XTE8	C3Z3W7	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	TSNAXIP1_N domain-containing protein.	0.633
C3XTE8_BRAFL	C3Z9A8_BRAFL	C3XTE8	C3Z9A8	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.741
C3XTE8_BRAFL	C3ZAE2_BRAFL	C3XTE8	C3ZAE2	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.564
C3XTE8_BRAFL	C3ZLV4_BRAFL	C3XTE8	C3ZLV4	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.678
C3XXX7_BRAFL	C3XTE8_BRAFL	C3XXX7	C3XTE8	PID domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.957
C3XXX7_BRAFL	C3Y684_BRAFL	C3XXX7	C3Y684	PID domain-containing protein.	Uncharacterized protein.	0.780
C3XXX7_BRAFL	C3YIJ5_BRAFL	C3XXX7	C3YIJ5	PID domain-containing protein.	MHD domain-containing protein.	0.651
C3XXX7_BRAFL	C3YIJ6_BRAFL	C3XXX7	C3YIJ6	PID domain-containing protein.	FCH domain-containing protein.	0.651
C3XXX7_BRAFL	C3YXU9_BRAFL	C3XXX7	C3YXU9	PID domain-containing protein.	ENTH domain-containing protein.	0.709
C3XXX7_BRAFL	C3YZV8_BRAFL	C3XXX7	C3YZV8	PID domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.673
C3XXX7_BRAFL	C3Z1G4_BRAFL	C3XXX7	C3Z1G4	PID domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.588
C3XXX7_BRAFL	C3Z3J8_BRAFL	C3XXX7	C3Z3J8	PID domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.636
C3XXX7_BRAFL	C3Z3W7_BRAFL	C3XXX7	C3Z3W7	PID domain-containing protein.	TSNAXIP1_N domain-containing protein.	0.437
C3XXX7_BRAFL	C3Z9A8_BRAFL	C3XXX7	C3Z9A8	PID domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.724
C3XXX7_BRAFL	C3ZAE2_BRAFL	C3XXX7	C3ZAE2	PID domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.492
C3XXX7_BRAFL	C3ZLK0_BRAFL	C3XXX7	C3ZLK0	PID domain-containing protein.	Uncharacterized protein.	0.786
C3XXX7_BRAFL	C3ZLK1_BRAFL	C3XXX7	C3ZLK1	PID domain-containing protein.	Uncharacterized protein.	0.786
C3XXX7_BRAFL	C3ZLV4_BRAFL	C3XXX7	C3ZLV4	PID domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.634