STRINGSTRING
leuS_1 leuS_1 priA_1 priA_1 GCA_000730685_01484 GCA_000730685_01484 GCA_000730685_01483 GCA_000730685_01483 glyS glyS glyQ glyQ ileS_1 ileS_1 NCTC8284_03484 NCTC8284_03484 rhlB rhlB ung ung rnc_1 rnc_1 mutM_3 mutM_3 rnhA rnhA dnaQ_1 dnaQ_1 rpoZ rpoZ recG_1 recG_1 hemA_2 hemA_2 rsuA_2 rsuA_2 rng_1 rng_1 rsmC_1 rsmC_1 holD holD uvrD_1 uvrD_1 GCA_000730685_01298 GCA_000730685_01298 hrpA_5 hrpA_5 ligA_1 ligA_1 rsmH_2 rsmH_2 cysS_4 cysS_4 GCA_000730685_01177 GCA_000730685_01177 GCA_000730685_01160 GCA_000730685_01160 GCA_000730685_01154 GCA_000730685_01154 parC_2 parC_2 parE_2 parE_2 NCTC8284_01504 NCTC8284_01504 rnd_1 rnd_1 rlmL_1 rlmL_1 rsmI_1 rsmI_1 argS_1 argS_1 lysS lysS uvrB_1 uvrB_1 dnaB2 dnaB2 cca_1 cca_1 radA_2 radA_2 truA_2 truA_2 GCA_000730685_00913 GCA_000730685_00913 dinB_2 dinB_2 hemK hemK hsdR_1 hsdR_1 NCTC8284_01976 NCTC8284_01976 glnS_2 glnS_2 rluB rluB prmB_2 prmB_2 topA_4 topA_4 asnC_1 asnC_1 pheS_2 pheS_2 pheT_1 pheT_1 thrS_2 thrS_2 truB truB GCA_000730685_00780 GCA_000730685_00780 thiI_2 thiI_2 sbcB_2 sbcB_2 mrr mrr rlmE rlmE metG_3 metG_3 recD_1 recD_1 recB_2 recB_2 ybaK_2 ybaK_2 truC_1 truC_1 nth nth NCTC8284_02434 NCTC8284_02434 GCA_000730685_00646 GCA_000730685_00646 GCA_000730685_00645 GCA_000730685_00645 mutY_2 mutY_2 gltX_1 gltX_1 tgt tgt queA_2 queA_2 NCTC8284_00958 NCTC8284_00958 nudC_1 nudC_1 rsmA_2 rsmA_2 GCA_000730685_00533 GCA_000730685_00533 rph rph dusC_1 dusC_1 rlmH rlmH rho_4 rho_4 yjeA yjeA topB2_3 topB2_3 rluC_1 rluC_1 rne_4 rne_4 rnt_1 rnt_1 aspS aspS ruvC ruvC ruvA ruvA ruvB ruvB trmJ trmJ dnaN_1 dnaN_1 rnpA rnpA rumB_1 rumB_1 rlmN_1 rlmN_1 hisS hisS NCTC8284_01412 NCTC8284_01412 NCTC8284_01413 NCTC8284_01413 bcgIA bcgIA NCTC8284_01421 NCTC8284_01421 NCTC8284_01468 NCTC8284_01468 pth pth xseA xseA miaA miaA mutL mutL orn_3 orn_3 holC holC valS_2 valS_2 mfd_4 mfd_4 dnaX_2 dnaX_2 D3M82_09415 D3M82_09415 serS_1 serS_1 uvrC_2 uvrC_2 ybeY ybeY recC_1 recC_1 GCA_000730685_00110 GCA_000730685_00110 cas1 cas1 rnb_1 rnb_1 gyrA_2 gyrA_2 GCA_000730685_00090 GCA_000730685_00090 GCA_000730685_00086 GCA_000730685_00086 GCA_000730685_00084 GCA_000730685_00084 GCA_000730685_00079 GCA_000730685_00079 rluA_1 rluA_1 hsdR_2 hsdR_2 NCTC8284_02533 NCTC8284_02533 xthA xthA tyrS_4 tyrS_4 NCTC8284_02519 NCTC8284_02519 BKG95_02555 BKG95_02555 GCA_000730685_00011 GCA_000730685_00011 GCA_000730685_02303 GCA_000730685_02303 GCA_000730685_02302 GCA_000730685_02302 GCA_000730685_02287 GCA_000730685_02287 GCA_000730685_02281 GCA_000730685_02281 GCA_000730685_02280 GCA_000730685_02280 GCA_000730685_02274 GCA_000730685_02274 GCA_000730685_02254 GCA_000730685_02254 GCA_000730685_02253 GCA_000730685_02253 GCA_000730685_02250 GCA_000730685_02250 GCA_000730685_02221 GCA_000730685_02221 GCA_000730685_02217 GCA_000730685_02217 GCA_000730685_02215 GCA_000730685_02215 ileS_4 ileS_4 srmB_2 srmB_2 yfiC yfiC rapA_1 rapA_1 rluA_3 rluA_3 rnr_1 rnr_1 rlmB_1 rlmB_1 uvrA_4 uvrA_4 trmD trmD polA_1 polA_1 deaD_3 deaD_3 rluD_2 rluD_2 rnhB rnhB NCTC8284_03779 NCTC8284_03779 dnaG_2 dnaG_2 ligA_3 ligA_3 selA selA dusA dusA trmA_2 trmA_2 smtA_2 smtA_2 truD_1 truD_1 rsmB_2 rsmB_2 fmt fmt dnaE_2 dnaE_2 rpoC rpoC rpoB_2 rpoB_2 tag tag NCTC8284_00347 NCTC8284_00347 ycfH_1 ycfH_1 holB_1 holB_1 rsmG_1 rsmG_1 NCTC8284_00210 NCTC8284_00210 gyrB_1 gyrB_1 dtd dtd recA_1 recA_1 NCTC8284_00070 NCTC8284_00070 recQ_2 recQ_2 proS_2 proS_2 mutS mutS rpoA_2 rpoA_2 alaS_3 alaS_3 recA_2 recA_2 xerC_2 xerC_2 rep_1 rep_1 trmL trmL rsmD rsmD dusB dusB rumA_1 rumA_1 xerD xerD trpS trpS NCTC8284_00767 NCTC8284_00767 dam_1 dam_1 holA_1 holA_1 trmB_2 trmB_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
leuS_1Unannotated protein. (862 aa)
priA_1Unannotated protein. (730 aa)
GCA_000730685_01484Unannotated protein. (221 aa)
GCA_000730685_01483Unannotated protein. (504 aa)
glySUnannotated protein. (688 aa)
glyQUnannotated protein. (302 aa)
ileS_1Unannotated protein. (213 aa)
NCTC8284_03484Unannotated protein. (244 aa)
rhlBUnannotated protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (416 aa)
ungUnannotated protein; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. (220 aa)
rnc_1Unannotated protein. (227 aa)
mutM_3Unannotated protein. (271 aa)
rnhAUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (165 aa)
dnaQ_1Unannotated protein. (255 aa)
rpoZUnannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (88 aa)
recG_1Unannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (693 aa)
hemA_2Unannotated protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (439 aa)
rsuA_2Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (234 aa)
rng_1Unannotated protein. (491 aa)
rsmC_1Unannotated protein. (330 aa)
holDUnannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. (134 aa)
uvrD_1Unannotated protein. (726 aa)
GCA_000730685_01298Unannotated protein. (504 aa)
hrpA_5Unannotated protein. (1303 aa)
ligA_1Unannotated protein. (273 aa)
rsmH_2Unannotated protein. (322 aa)
cysS_4Unannotated protein. (459 aa)
GCA_000730685_01177Unannotated protein. (504 aa)
GCA_000730685_01160Unannotated protein. (172 aa)
GCA_000730685_01154Unannotated protein. (64 aa)
parC_2Unannotated protein. (752 aa)
parE_2Unannotated protein. (632 aa)
NCTC8284_01504Unannotated protein. (637 aa)
rnd_1Unannotated protein. (384 aa)
rlmL_1Unannotated protein; Belongs to the methyltransferase superfamily. (715 aa)
rsmI_1Unannotated protein. (281 aa)
argS_1Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (577 aa)
lysSUnannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (502 aa)
uvrB_1Unannotated protein. (678 aa)
dnaB2Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (468 aa)
cca_1Unannotated protein. (423 aa)
radA_2Unannotated protein. (458 aa)
truA_2Unannotated protein. (264 aa)
GCA_000730685_00913Unannotated protein. (504 aa)
dinB_2Unannotated protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (355 aa)
hemKUnannotated protein. (295 aa)
hsdR_1Unannotated protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1054 aa)
NCTC8284_01976Unannotated protein. (581 aa)
glnS_2Unannotated protein. (557 aa)
rluBUnannotated protein; Belongs to the pseudouridine synthase RsuA family. (340 aa)
prmB_2Unannotated protein; Belongs to the protein N5-glutamine methyltransferase family. (314 aa)
topA_4Unannotated protein. (876 aa)
asnC_1Unannotated protein. (467 aa)
pheS_2Unannotated protein. (329 aa)
pheT_1Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (795 aa)
thrS_2Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (643 aa)
truBUnannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (306 aa)
GCA_000730685_00780Unannotated protein. (79 aa)
thiI_2Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (483 aa)
sbcB_2Unannotated protein. (473 aa)
mrrUnannotated protein. (296 aa)
rlmEUnannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (212 aa)
metG_3Unannotated protein. (682 aa)
recD_1Unannotated protein. (646 aa)
recB_2Unannotated protein. (1204 aa)
ybaK_2Unannotated protein. (159 aa)
truC_1Unannotated protein. (237 aa)
nthUnannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa)
NCTC8284_02434Unannotated protein. (221 aa)
GCA_000730685_00646Unannotated protein. (374 aa)
GCA_000730685_00645Unannotated protein. (102 aa)
mutY_2Unannotated protein. (377 aa)
gltX_1Unannotated protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (477 aa)
tgtUnannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] (387 aa)
queA_2Unannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (363 aa)
NCTC8284_00958Unannotated protein. (346 aa)
nudC_1Unannotated protein. (266 aa)
rsmA_2Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (287 aa)
GCA_000730685_00533Unannotated protein. (630 aa)
rphUnannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
dusC_1Unannotated protein. (311 aa)
rlmHUnannotated protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (155 aa)
rho_4Unannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (420 aa)
yjeAUnannotated protein. (327 aa)
topB2_3Unannotated protein. (640 aa)
rluC_1Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (333 aa)
rne_4Unannotated protein. (931 aa)
rnt_1Unannotated protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (215 aa)
aspSUnannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (588 aa)
ruvCUnannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (190 aa)
ruvAUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (204 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (335 aa)
trmJUnannotated protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (244 aa)
dnaN_1Unannotated protein. (366 aa)
rnpAUnannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (107 aa)
rumB_1Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (390 aa)
rlmN_1Unannotated protein. (377 aa)
hisSUnannotated protein. (423 aa)
NCTC8284_01412Unannotated protein. (217 aa)
NCTC8284_01413Unannotated protein. (137 aa)
bcgIAUnannotated protein. (595 aa)
NCTC8284_01421Unannotated protein. (345 aa)
NCTC8284_01468Unannotated protein. (193 aa)
pthUnannotated protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (194 aa)
xseAUnannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (441 aa)
miaAUnannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (311 aa)
mutLUnannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (629 aa)
orn_3Unannotated protein. (182 aa)
holCUnannotated protein. (143 aa)
valS_2Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (936 aa)
mfd_4Unannotated protein. (1146 aa)
dnaX_2Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (696 aa)
D3M82_09415Unannotated protein. (144 aa)
serS_1Unannotated protein. (429 aa)
uvrC_2Unannotated protein. (608 aa)
ybeYUnannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (160 aa)
recC_1Unannotated protein. (1131 aa)
GCA_000730685_00110Unannotated protein. (108 aa)
cas1Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (305 aa)
rnb_1Unannotated protein; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. (659 aa)
gyrA_2Unannotated protein. (880 aa)
GCA_000730685_00090Unannotated protein. (379 aa)
GCA_000730685_00086Unannotated protein. (656 aa)
GCA_000730685_00084Unannotated protein. (345 aa)
GCA_000730685_00079Unannotated protein. (504 aa)
rluA_1Unannotated protein. (245 aa)
hsdR_2Unannotated protein. (1047 aa)
NCTC8284_02533Unannotated protein. (544 aa)
xthAUnannotated protein. (267 aa)
tyrS_4Unannotated protein. (395 aa)
NCTC8284_02519Unannotated protein. (344 aa)
BKG95_02555Unannotated protein. (60 aa)
GCA_000730685_00011Unannotated protein. (504 aa)
GCA_000730685_02303Unannotated protein. (504 aa)
GCA_000730685_02302Unannotated protein. (221 aa)
GCA_000730685_02287Unannotated protein. (345 aa)
GCA_000730685_02281Unannotated protein. (213 aa)
GCA_000730685_02280Unannotated protein. (250 aa)
GCA_000730685_02274Unannotated protein. (64 aa)
GCA_000730685_02254Unannotated protein. (214 aa)
GCA_000730685_02253Unannotated protein. (474 aa)
GCA_000730685_02250Unannotated protein. (504 aa)
GCA_000730685_02221Unannotated protein. (377 aa)
GCA_000730685_02217Unannotated protein. (249 aa)
GCA_000730685_02215Unannotated protein. (302 aa)
ileS_4Unannotated protein. (941 aa)
srmB_2Unannotated protein. (440 aa)
yfiCUnannotated protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (232 aa)
rapA_1Unannotated protein. (928 aa)
rluA_3Unannotated protein. (219 aa)
rnr_1Unannotated protein; Belongs to the RNR ribonuclease family. (777 aa)
rlmB_1Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (246 aa)
uvrA_4Unannotated protein. (943 aa)
trmDUnannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (249 aa)
polA_1Unannotated protein. (932 aa)
deaD_3Unannotated protein. (600 aa)
rluD_2Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (324 aa)
rnhBUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (197 aa)
NCTC8284_03779Unannotated protein. (287 aa)
dnaG_2Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (594 aa)
ligA_3Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (668 aa)
selAUnannotated protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (461 aa)
dusAUnannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (327 aa)
trmA_2Unannotated protein; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). (363 aa)
smtA_2Unannotated protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. (257 aa)
truD_1Unannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs. (339 aa)
rsmB_2Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (460 aa)
fmtUnannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (319 aa)
dnaE_2Unannotated protein. (1159 aa)
rpoCUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1422 aa)
rpoB_2Unannotated protein; Belongs to the RNA polymerase beta chain family. (1342 aa)
tagUnannotated protein. (182 aa)
NCTC8284_00347Unannotated protein. (180 aa)
ycfH_1Unannotated protein. (260 aa)
holB_1Unannotated protein. (327 aa)
rsmG_1Unannotated protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (221 aa)
NCTC8284_00210Unannotated protein. (151 aa)
gyrB_1Unannotated protein. (807 aa)
dtdUnannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. (144 aa)
recA_1Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (351 aa)
NCTC8284_00070Unannotated protein. (281 aa)
recQ_2Unannotated protein. (615 aa)
proS_2Unannotated protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacyl [...] (570 aa)
mutSUnannotated protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (861 aa)
rpoA_2Unannotated protein. (327 aa)
alaS_3Unannotated protein. (875 aa)
recA_2Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (368 aa)
xerC_2Unannotated protein. (295 aa)
rep_1Unannotated protein. (673 aa)
trmLUnannotated protein; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (159 aa)
rsmDUnannotated protein; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (193 aa)
dusBUnannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (326 aa)
rumA_1Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (438 aa)
xerDUnannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (297 aa)
trpSUnannotated protein; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (334 aa)
NCTC8284_00767Unannotated protein; Belongs to the RNase T2 family. (237 aa)
dam_1Unannotated protein. (283 aa)
holA_1Unannotated protein. (344 aa)
trmB_2Unannotated protein. (246 aa)
Your Current Organism:
Rodentibacter pneumotropicus
NCBI taxonomy Id: 758
Other names: ATCC 35149, CCUG 12398, CIP 66.16, DSM 21403, JCM 14074, LMG 4224, LMG:4224, NCTC 8141, Pasteurella pneumotropica, Pasteurellaceae bacterium Ac63, R. pneumotropicus
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