(18 nodes) Motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0D4U1_PARTE	PCI domain-containing protein. (149 aa)
	A0BZA4_PARTE	PCI domain-containing protein. (418 aa)
	A0CYF7_PARTE	PCI domain-containing protein. (451 aa)
	A0BT65_PARTE	PCI domain-containing protein. (418 aa)
	A0CXU0_PARTE	PCI domain-containing protein. (423 aa)
	A0CRP8_PARTE	PCI domain-containing protein. (423 aa)
	A0CG46_PARTE	PCI domain-containing protein. (368 aa)
	A0BRE2_PARTE	PCI domain-containing protein. (319 aa)
	A0BLL8_PARTE	PCI domain-containing protein. (319 aa)
	A0BUN6_PARTE	Uncharacterized protein. (484 aa)
	A0C9G6_PARTE	PCI domain-containing protein. (369 aa)
	A0E827_PARTE	Uncharacterized protein. (484 aa)
	A0DX64_PARTE	PCI domain-containing protein. (368 aa)
	A0DNF3_PARTE	PCI domain-containing protein. (208 aa)
	A0DM22_PARTE	PCI domain-containing protein. (217 aa)
	A0DH82_PARTE	PCI domain-containing protein. (149 aa)
	A0DGJ4_PARTE	PCI domain-containing protein. (369 aa)
	A0DEX4_PARTE	PCI domain-containing protein; Belongs to the eIF-3 subunit C family. (846 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BLL8_PARTE	A0BRE2_PARTE	A0BLL8	A0BRE2	PCI domain-containing protein.	PCI domain-containing protein.	0.900
A0BLL8_PARTE	A0BT65_PARTE	A0BLL8	A0BT65	PCI domain-containing protein.	PCI domain-containing protein.	0.998
A0BLL8_PARTE	A0BUN6_PARTE	A0BLL8	A0BUN6	PCI domain-containing protein.	Uncharacterized protein.	0.999
A0BLL8_PARTE	A0BZA4_PARTE	A0BLL8	A0BZA4	PCI domain-containing protein.	PCI domain-containing protein.	0.998
A0BLL8_PARTE	A0CG46_PARTE	A0BLL8	A0CG46	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0BLL8_PARTE	A0CRP8_PARTE	A0BLL8	A0CRP8	PCI domain-containing protein.	PCI domain-containing protein.	0.996
A0BLL8_PARTE	A0CXU0_PARTE	A0BLL8	A0CXU0	PCI domain-containing protein.	PCI domain-containing protein.	0.996
A0BLL8_PARTE	A0CYF7_PARTE	A0BLL8	A0CYF7	PCI domain-containing protein.	PCI domain-containing protein.	0.996
A0BLL8_PARTE	A0DM22_PARTE	A0BLL8	A0DM22	PCI domain-containing protein.	PCI domain-containing protein.	0.782
A0BLL8_PARTE	A0DNF3_PARTE	A0BLL8	A0DNF3	PCI domain-containing protein.	PCI domain-containing protein.	0.782
A0BLL8_PARTE	A0DX64_PARTE	A0BLL8	A0DX64	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0BLL8_PARTE	A0E827_PARTE	A0BLL8	A0E827	PCI domain-containing protein.	Uncharacterized protein.	0.999
A0BRE2_PARTE	A0BLL8_PARTE	A0BRE2	A0BLL8	PCI domain-containing protein.	PCI domain-containing protein.	0.900
A0BRE2_PARTE	A0BT65_PARTE	A0BRE2	A0BT65	PCI domain-containing protein.	PCI domain-containing protein.	0.998
A0BRE2_PARTE	A0BUN6_PARTE	A0BRE2	A0BUN6	PCI domain-containing protein.	Uncharacterized protein.	0.999
A0BRE2_PARTE	A0BZA4_PARTE	A0BRE2	A0BZA4	PCI domain-containing protein.	PCI domain-containing protein.	0.998
A0BRE2_PARTE	A0CG46_PARTE	A0BRE2	A0CG46	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0BRE2_PARTE	A0CRP8_PARTE	A0BRE2	A0CRP8	PCI domain-containing protein.	PCI domain-containing protein.	0.996
A0BRE2_PARTE	A0CXU0_PARTE	A0BRE2	A0CXU0	PCI domain-containing protein.	PCI domain-containing protein.	0.996
A0BRE2_PARTE	A0CYF7_PARTE	A0BRE2	A0CYF7	PCI domain-containing protein.	PCI domain-containing protein.	0.996