52 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109995878	Uncharacterized protein. (156 aa)
	LOC109984072	Ubiquitin-like domain-containing protein. (477 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC109992280	Ubiquitin domain containing 1b. (246 aa)
	LOC109988722	Ubiquitin-like domain-containing protein. (91 aa)
	ublcp1	Ubiquitin-like domain containing CTD phosphatase 1. (318 aa)
	ubtd2	Ubiquitin domain containing 2. (272 aa)
	LOC109996628	NEDD8 ubiquitin like modifier, like. (90 aa)
	UBQLN4	Ubiquilin 4. (630 aa)
	ENSLBEP00000003208	Ubiquitin-like domain-containing protein. (270 aa)
	uhrf1	Ubiquitin-like with PHD and ring finger domains 1. (782 aa)
	LOC109992955	Elongin B. (121 aa)
	LOC110002099	Ubiquitin-like domain-containing protein. (156 aa)
	LOC110002821	Small ubiquitin-related modifier. (96 aa)
	LOC109976847	Ubiquitin-like domain-containing protein. (77 aa)
	ENSLBEP00000007465	Ubiquitin-like domain-containing protein. (78 aa)
	yod1	YOD1 deubiquitinase. (301 aa)
	zfand4	Zinc finger, AN1-type domain 4. (735 aa)
	ENSLBEP00000009309	Ubiquitin-like domain-containing protein. (92 aa)
	LOC109995874	ISG15 ubiquitin like modifier. (153 aa)
	LOC109995873	Polyubiquitin-like. (153 aa)
	LOC109995872	ISG15 ubiquitin like modifier. (153 aa)
	ENSLBEP00000009735	Ubiquitin-like domain-containing protein. (72 aa)
	tmub2	Transmembrane and ubiquitin-like domain containing 2. (304 aa)
	LOC109999916	RAD23 homolog A, nucleotide excision repair protein a. (362 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (382 aa)
	LOC109975735	Polyubiquitin-like. (153 aa)
	ENSLBEP00000013502	Ubiquitin-like domain-containing protein. (149 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	LOC110000612	RAD23 homolog A, nucleotide excision repair protein b. (480 aa)
	ENSLBEP00000020095	Ubiquitin-like domain-containing protein. (235 aa)
	bag1	BCL2 associated athanogene 1. (207 aa)
	LOC109982754	Midnolin. (584 aa)
	ubb	Ubiquitin B. (759 aa)
	LOC109992030	BCL2 associated athanogene 6. (1142 aa)
	LOC109979439	Transmembrane and ubiquitin-like domain containing 1. (267 aa)
	LOC109976023	Uncharacterized protein. (368 aa)
	UHRF2	Ubiquitin like with PHD and ring finger domains 2. (789 aa)
	rad23b	Uncharacterized protein. (383 aa)
	LOC109998305	Small ubiquitin-related modifier. (94 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (525 aa)
	LOC109997178	Small ubiquitin-related modifier. (95 aa)
	ENSLBEP00000027267	Ubiquitin-like domain-containing protein. (236 aa)
	ELOB	Elongin B. (122 aa)
	ddi2	DNA-damage inducible protein 2. (913 aa)
	sf3a1	Splicing factor 3a, subunit 1. (783 aa)
	ubfd1	Ubiquitin family domain containing 1. (288 aa)
	LOC109982950	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (130 aa)
	herpud2	HERPUD family member 2. (417 aa)
	LOC109988679	Ubiquitin-like domain-containing protein. (382 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSLBEP00000007465	ENSLBEP00000029362	ENSLBEP00000007465	Elongin B.	Ubiquitin-like domain-containing protein.	0.615
ELOB	ENSLBEP00000009309	ENSLBEP00000029362	ENSLBEP00000009309	Elongin B.	Ubiquitin-like domain-containing protein.	0.615
ELOB	ENSLBEP00000009735	ENSLBEP00000029362	ENSLBEP00000009735	Elongin B.	Ubiquitin-like domain-containing protein.	0.615
ELOB	LOC109975735	ENSLBEP00000029362	ENSLBEP00000013120	Elongin B.	Polyubiquitin-like.	0.615
ELOB	LOC109976023	ENSLBEP00000029362	ENSLBEP00000024459	Elongin B.	Uncharacterized protein.	0.566
ELOB	LOC109976847	ENSLBEP00000029362	ENSLBEP00000007421	Elongin B.	Ubiquitin-like domain-containing protein.	0.698
ELOB	LOC109982950	ENSLBEP00000029362	ENSLBEP00000032776	Elongin B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.661
ELOB	LOC109988722	ENSLBEP00000029362	ENSLBEP00000001613	Elongin B.	Ubiquitin-like domain-containing protein.	0.948
ELOB	LOC109992955	ENSLBEP00000029362	ENSLBEP00000005412	Elongin B.	Elongin B.	0.893
ELOB	LOC109995872	ENSLBEP00000029362	ENSLBEP00000009717	Elongin B.	ISG15 ubiquitin like modifier.	0.615
ELOB	LOC109995873	ENSLBEP00000029362	ENSLBEP00000009648	Elongin B.	Polyubiquitin-like.	0.615
ELOB	LOC109995874	ENSLBEP00000029362	ENSLBEP00000009597	Elongin B.	ISG15 ubiquitin like modifier.	0.615
ELOB	LOC109995878	ENSLBEP00000029362	ENSLBEP00000009804	Elongin B.	Uncharacterized protein.	0.615
ELOB	LOC109996628	ENSLBEP00000029362	ENSLBEP00000002311	Elongin B.	NEDD8 ubiquitin like modifier, like.	0.948
ELOB	LOC109999916	ENSLBEP00000029362	ENSLBEP00000011043	Elongin B.	RAD23 homolog A, nucleotide excision repair protein a.	0.566
ELOB	LOC110000612	ENSLBEP00000029362	ENSLBEP00000018768	Elongin B.	RAD23 homolog A, nucleotide excision repair protein b.	0.566
ELOB	LOC110002099	ENSLBEP00000029362	ENSLBEP00000006393	Elongin B.	Ubiquitin-like domain-containing protein.	0.615
ELOB	UBQLN4	ENSLBEP00000029362	ENSLBEP00000002986	Elongin B.	Ubiquilin 4.	0.568
ELOB	rad23b	ENSLBEP00000029362	ENSLBEP00000024949	Elongin B.	Uncharacterized protein.	0.566
ELOB	rps27a	ENSLBEP00000029362	ENSLBEP00000000668	Elongin B.	Ribosomal protein S27a.	0.783