STRINGSTRING
AMSG_09989 AMSG_09989 AMSG_01948 AMSG_01948 AMSG_11749 AMSG_11749 AMSG_03192 AMSG_03192 AMSG_02462 AMSG_02462 AMSG_04178 AMSG_04178 AMSG_04793 AMSG_04793 AMSG_05327 AMSG_05327 AMSG_07345 AMSG_07345 AMSG_09202 AMSG_09202
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMSG_09989Uncharacterized protein. (1263 aa)
AMSG_01948PrpF31 U4/U6*U5 snRNP-associated pre-mRNA processing factor 31. (468 aa)
AMSG_11749Sm domain-containing protein. (81 aa)
AMSG_03192zf-U1 domain-containing protein. (264 aa)
AMSG_02462Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (103 aa)
AMSG_04178Small nuclear ribonucleoprotein SmG. (73 aa)
AMSG_04793RNA splicing factor. (918 aa)
AMSG_05327Small nuclear ribonucleoprotein Sm D2. (104 aa)
AMSG_07345Uncharacterized protein. (454 aa)
AMSG_09202Pre-mRNA-processing-splicing factor 8. (2345 aa)
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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