14 items (Neophocaena asiaeorientalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TREM2	Triggering receptor expressed on myeloid cells 2. (230 aa)
	PICALM	Phosphatidylinositol-binding clathrin assembly protein isoform X11. (686 aa)
	CLTC	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1675 aa)
	LRP4	Low-density lipoprotein receptor-related protein 4. (1914 aa)
	MSR1	Macrophage scavenger receptor types I and II isoform X1. (454 aa)
	LDLR	Low-density lipoprotein receptor isoform X1. (857 aa)
	LRPAP1	Alpha-2-macroglobulin receptor-associated protein. (360 aa)
	RAB5A	Ras-related protein Rab-5A isoform X1. (215 aa)
	IDE	Insulin-degrading enzyme isoform X2; Belongs to the peptidase M16 family. (1019 aa)
	LRP1	Prolow-density lipoprotein receptor-related protein 1. (4544 aa)
	RAB11A	Ras-related protein Rab-11A isoform X1. (218 aa)
	IGF1R	Tyrosine-protein kinase receptor. (1368 aa)
	LOC112390458	Platelet glycoprotein 4-like isoform X1; Belongs to the CD36 family. (472 aa)
	LOC112390457	Platelet glycoprotein 4; Belongs to the CD36 family. (472 aa)

Your Current Organism:

Neophocaena asiaeorientalis

NCBI taxonomy Id: 1706337
Other names: N. asiaeorientalis asiaeorientalis, Neophocaena asiaeorientalis asiaeorientalis, Yangtze finless porpoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLTC	LDLR	A0A341CEZ2	A0A341BJ14	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Low-density lipoprotein receptor isoform X1.	0.523
CLTC	LRP1	A0A341CEZ2	A0A341ASY1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Prolow-density lipoprotein receptor-related protein 1.	0.457
CLTC	LRP4	A0A341CEZ2	A0A341BNH2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Low-density lipoprotein receptor-related protein 4.	0.599
CLTC	PICALM	A0A341CEZ2	A0A341CXG7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Phosphatidylinositol-binding clathrin assembly protein isoform X11.	0.900
CLTC	RAB11A	A0A341CEZ2	A0A341ALY9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-11A isoform X1.	0.445
CLTC	RAB5A	A0A341CEZ2	A0A341B811	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ras-related protein Rab-5A isoform X1.	0.554
LDLR	CLTC	A0A341BJ14	A0A341CEZ2	Low-density lipoprotein receptor isoform X1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.523
LDLR	LRPAP1	A0A341BJ14	A0A341BF68	Low-density lipoprotein receptor isoform X1.	Alpha-2-macroglobulin receptor-associated protein.	0.677
LOC112390457	LOC112390458	A0A341AB93	A0A341ABA0	Platelet glycoprotein 4; Belongs to the CD36 family.	Platelet glycoprotein 4-like isoform X1; Belongs to the CD36 family.	0.838
LOC112390457	MSR1	A0A341AB93	A0A341BLH1	Platelet glycoprotein 4; Belongs to the CD36 family.	Macrophage scavenger receptor types I and II isoform X1.	0.495
LOC112390458	LOC112390457	A0A341ABA0	A0A341AB93	Platelet glycoprotein 4-like isoform X1; Belongs to the CD36 family.	Platelet glycoprotein 4; Belongs to the CD36 family.	0.838
LOC112390458	MSR1	A0A341ABA0	A0A341BLH1	Platelet glycoprotein 4-like isoform X1; Belongs to the CD36 family.	Macrophage scavenger receptor types I and II isoform X1.	0.495
LRP1	CLTC	A0A341ASY1	A0A341CEZ2	Prolow-density lipoprotein receptor-related protein 1.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.457
LRP1	LRPAP1	A0A341ASY1	A0A341BF68	Prolow-density lipoprotein receptor-related protein 1.	Alpha-2-macroglobulin receptor-associated protein.	0.968
LRP4	CLTC	A0A341BNH2	A0A341CEZ2	Low-density lipoprotein receptor-related protein 4.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.599
LRP4	LRPAP1	A0A341BNH2	A0A341BF68	Low-density lipoprotein receptor-related protein 4.	Alpha-2-macroglobulin receptor-associated protein.	0.782
LRP4	PICALM	A0A341BNH2	A0A341CXG7	Low-density lipoprotein receptor-related protein 4.	Phosphatidylinositol-binding clathrin assembly protein isoform X11.	0.460
LRPAP1	LDLR	A0A341BF68	A0A341BJ14	Alpha-2-macroglobulin receptor-associated protein.	Low-density lipoprotein receptor isoform X1.	0.677
LRPAP1	LRP1	A0A341BF68	A0A341ASY1	Alpha-2-macroglobulin receptor-associated protein.	Prolow-density lipoprotein receptor-related protein 1.	0.968
LRPAP1	LRP4	A0A341BF68	A0A341BNH2	Alpha-2-macroglobulin receptor-associated protein.	Low-density lipoprotein receptor-related protein 4.	0.782