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| | malX | Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE. (63 aa) |
| | KXU13878.1 | Beta-galactosidase. (1309 aa) |
| | carA | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. (359 aa) |
| | KXU13697.1 | Hypothetical protein. (241 aa) |
| | rpoE | DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (196 aa) |
| | dnaN | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (378 aa) |
| | rpsD | SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (203 aa) |
| | arlR_2 | Two component system response regulator CiaR. (224 aa) |
| | trmB | tRNA (guanine46-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (211 aa) |
| | KXU13353.1 | Replicative DNA helicase (DnaB). (59 aa) |
| | KXU13354.1 | Replicative DNA helicase (DnaB). (135 aa) |
| | KXU13355.1 | Phage replication initiation protein. (245 aa) |
| | KXU13356.1 | Helicase loader DnaI. (273 aa) |
| | KXU13242.1 | Hypothetical protein. (150 aa) |
| | KXU13243.1 | Hypothetical protein. (59 aa) |
| | agrA_2 | Response regulator of the competence regulon ComE. (250 aa) |
| | rplJ | LSU ribosomal protein L10p (P0); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa) |
| | NrdE | Ribonucleotide reductase of class Ib (aerobic), alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (254 aa) |
| | KXU12952.1 | Manganese ABC transporter, ATP-binding protein SitB. (240 aa) |
| | rpmF | LSU ribosomal protein L32p, zinc-independent; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | KXU11821.1 | Chromosome segregation helicase. (126 aa) |
| | PsaB | Manganese ABC transporter, ATP-binding protein SitB. (68 aa) |
| | KXU16749.1 | L-proline glycine betaine binding ABC transporter protein ProX / Osmotic adaptation; TC 3.A.1.12.1. (472 aa) |
| | priA | Helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (795 aa) |
| | rpoZ | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (104 aa) |
| | gatA | Aspartyl-tRNA(Asn) amidotransferase subunit A / Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (488 aa) |
| | accA | Acetyl-coenzyme A carboxyl transferase alpha chain; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (255 aa) |
| | accD | Acetyl-coenzyme A carboxyl transferase beta chain; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (288 aa) |
| | accB | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (162 aa) |
| | amiA_2 | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TC 3.A.1.5.1. (659 aa) |
| | liaR | Two component transcriptional regulator VraR. (210 aa) |
| | RitR | Response regulator CsrR. (152 aa) |
| | KXU16661.1 | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TC 3.A.1.5.1. (659 aa) |
| | AliB1 | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TC 3.A.1.5.1. (655 aa) |
| | yecS_1 | Amino acid ABC transporter, glutamine-binding protein/permease protein. (520 aa) |
| | ilvB | Acetolactate synthase large subunit. (566 aa) |
| | rpsG | SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (137 aa) |
| | KXU16595.1 | Two-component response regulator. (199 aa) |
| | KXU16597.1 | ABC transporter permease protein. (244 aa) |
| | rpoC | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1221 aa) |
| | rpoB | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1203 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (332 aa) |
| | rpoA | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (97 aa) |
| | rplO | LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | LSU ribosomal protein L30p (L7e). (60 aa) |
| | rpsE | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (164 aa) |
| | rplN | LSU ribosomal protein L14p (L23e); Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplV | LSU ribosomal protein L22p (L17e); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (63 aa) |
| | rpsS | SSU ribosomal protein S19p (S15e); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rplB | LSU ribosomal protein L2p (L8e); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | nrdD | Ribonucleotide reductase of class III (anaerobic), large subunit. (735 aa) |
| | uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (259 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (197 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (650 aa) |
| | znuB | Zinc ABC transporter, inner membrane permease protein ZnuB. (268 aa) |
| | znuC_1 | Zinc ABC transporter, ATP-binding protein ZnuC. (234 aa) |
| | dnaB | Replicative DNA helicase (DnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (255 aa) |
| | rpsB | SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family. (259 aa) |
| | nrdF | Ribonucleotide reductase of class Ib (aerobic), beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (112 aa) |
| | KXU16319.1 | Hypothetical protein. (232 aa) |
| | rexB | ATP-dependent nuclease, subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily. (610 aa) |
| | addA | ATP-dependent nuclease, subunit A; ATP-dependent DNA helicase. (943 aa) |
| | KXU16300.1 | Glutamine ABC transporter, glutamine-binding protein/permease protein. (721 aa) |
| | KXU16287.1 | Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex. (347 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (434 aa) |
| | rr02 | Two-component response regulator SA14-24. (235 aa) |
| | coaB | Phosphopantothenoylcysteine synthetase. (229 aa) |
| | KXU16175.1 | Prophage Lp1 protein 19. (276 aa) |
| | coaC | Phosphopantothenoylcysteine decarboxylase. (183 aa) |
| | KXU16176.1 | Recombinational DNA repair protein RecT (prophage associated). (316 aa) |
| | KXU16181.1 | Helicase loader DnaI. (270 aa) |
| | KXU16184.1 | Replication protein. (272 aa) |
| | graR | Two-component response regulator. (225 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (607 aa) |
| | KXU16115.1 | Manganese ABC transporter, inner membrane permease protein SitD. (175 aa) |
| | VncR | Two-component response regulator VncR. (218 aa) |
| | KXU16080.1 | Hypothetical protein; Contains S4-like RNA binding domain. (263 aa) |
| | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (402 aa) |
| | KXU16005.1 | Type I restriction-modification system, DNA-methyltransferase subunit M / specificity subunit S. (909 aa) |
| | KXU15990.1 | Transcriptional regulator, HxlR family. (115 aa) |
| | KXU15966.1 | Helicase loader DnaB. (387 aa) |
| | dnaI | Helicase loader DnaI. (298 aa) |
| | KXU15936.1 | Response regulator of the competence regulon ComE. (245 aa) |
| | KXU15937.1 | BlpS protein. (112 aa) |
| | sarA | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TC 3.A.1.5.1. (652 aa) |
| | artQ | ABC transporter membrane-spanning permease - glutamine transport. (227 aa) |
| | hcaR | Methionine biosynthesis and transport regulator MtaR, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa) |
| | KXU15847.1 | ABC-type amino acid transport system, permease component. (225 aa) |
| | KXU15848.1 | Polar amino acid ABC uptake transporter membrane-spanning protein. (57 aa) |
| | KXU15823.1 | Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine. (456 aa) |
| | spxB | Pyruvate oxidase; Belongs to the TPP enzyme family. (591 aa) |
| | KXU16746.1 | Transcriptional regulator SczA, TetR family. (184 aa) |
| | pdxT | Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (193 aa) |
| | KXU15806.1 | Cysteine ABC transporter, permease protein. (266 aa) |
| | KXU15687.1 | Type I restriction-modification system, specificity subunit S. (204 aa) |
| | KXU15660.1 | Restriction endonuclease S subunit. (191 aa) |
| | recD2 | RecD-like DNA helicase YrrC; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (321 aa) |
| | KXU15555.1 | Hypothetical protein. (435 aa) |
| | KXU15556.1 | Endonuclease. (642 aa) |
| | leuD | 3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (197 aa) |
| | xseB | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (70 aa) |
| | xseA | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (446 aa) |
| | dnaX | DNA polymerase III subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (551 aa) |
| | PavA | Fibronectin/fibrinogen-binding protein. (551 aa) |
| | KXU15358.1 | Chromosome replication initiation protein dnaD. (225 aa) |
| | rplA | LSU ribosomal protein L1p (L10Ae); Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (586 aa) |
| | KXU15256.1 | ABC transporter membrane-spanning permease - glutamine transport. (151 aa) |
| | atpD | ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (468 aa) |
| | atpG | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (292 aa) |
| | atpA | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (501 aa) |
| | atpH | ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (178 aa) |
| | atpF | ATP synthase B chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (59 aa) |
| | atpB | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (237 aa) |
| | atpE | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity). (66 aa) |
| | ffh | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (523 aa) |
| | potA | Putrescine transport ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (385 aa) |
| | KXU14809.1 | Twin-arginine translocation protein TatA. (56 aa) |
| | KXU14810.1 | Twin-arginine translocation protein TatC. (243 aa) |
| | holB | DNA polymerase III delta prime subunit. (296 aa) |
| | cysB | Cysteine and methionine metabolism regulator CmbR, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa) |
| | KXU14571.1 | Programmed cell death antitoxin MazE. (43 aa) |
| | KXU14454.1 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. (147 aa) |
| | holA | DNA polymerase III delta subunit. (345 aa) |
| | KXU14369.1 | Putative potassium channel; Truncated. (269 aa) |
| | nrdD_2 | Ribonucleotide reductase of class III (anaerobic), large subunit. (112 aa) |
| | KXU14242.1 | Carbamoylphosphate synthase large subunit. (388 aa) |
| | KXU14169.1 | Hypothetical protein. (228 aa) |
| | CglC | Late competence protein ComGC, access of DNA to ComEA. (107 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (123 aa) |
| | gpsA | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (338 aa) |
