34 items (Pediculus humanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E0V9D3_PEDHC	Cyclin H, putative (Fragment); Belongs to the cyclin family. (155 aa)
	E0V9Y7_PEDHC	Transcription initiation factor TFIID subunit, putative. (1197 aa)
	E0VAF8_PEDHC	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	E0VC09_PEDHC	Transcription initiation factor TFIID subunit, putative. (246 aa)
	E0VC41_PEDHC	Uncharacterized protein. (229 aa)
	E0VCF0_PEDHC	TFIIH basal transcription factor complex subunit, putative. (560 aa)
	E0VCI8_PEDHC	DNA excision repair protein haywire, putative. (794 aa)
	E0VEZ5_PEDHC	Transcription initiation factor TFIID subunit, putative. (645 aa)
	E0VFY0_PEDHC	General transcription factor IIH subunit. (401 aa)
	E0VGD5_PEDHC	Transcription initiation factor TFIID subunit, putative. (120 aa)
	E0VGZ1_PEDHC	Transcription initiation factor TFIID subunit, putative. (253 aa)
	E0VIK4_PEDHC	Predicted protein. (408 aa)
	E0VJL5_PEDHC	TAF domain-containing protein. (521 aa)
	E0VKS5_PEDHC	TFIIH basal transcription factor complex TTD-A subunit, putative. (71 aa)
	E0VNE5_PEDHC	Transcription initiation factor iib, putative. (313 aa)
	E0VNT9_PEDHC	Trf2 protein, putative. (231 aa)
	E0VPI1_PEDHC	Transcription initiation factor TFIID subunit, putative. (400 aa)
	E0VPQ2_PEDHC	WD-repeat protein, putative. (584 aa)
	E0VQA4_PEDHC	Trf2 protein, putative. (289 aa)
	E0VQC8_PEDHC	Transcription initiation factor TFIID subunit, putative. (542 aa)
	E0VRJ7_PEDHC	Mitogen-activated protein kinase ERK-A, putative; Belongs to the protein kinase superfamily. (340 aa)
	E0VS16_PEDHC	BTP domain-containing protein. (969 aa)
	E0VTQ3_PEDHC	Transcription initiation factor IIA alpha chain TFIIA p30, putative. (359 aa)
	E0VX10_PEDHC	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (112 aa)
	E0VX24_PEDHC	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (563 aa)
	E0VXJ2_PEDHC	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (285 aa)
	E0VY05_PEDHC	Transcription initiation factor TFIID subunit, putative. (260 aa)
	E0VYT4_PEDHC	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	E0VZG8_PEDHC	Trf2 protein, putative. (298 aa)
	E0VZR5_PEDHC	Transcription initiation factor TFIID subunit, putative. (1892 aa)
	E0VZS5_PEDHC	Transcription initiation factor TFIID subunit, putative. (921 aa)
	E0W1S0_PEDHC	Transcription initiation factor TFIID subunit, putative. (194 aa)
	E0W239_PEDHC	TFIIH basal transcription factor complex helicase subunit, putative. (747 aa)
	E0W312_PEDHC	Transcription initiation factor TFIID subunit, putative. (130 aa)

Your Current Organism:

Pediculus humanus

NCBI taxonomy Id: 121224
Other names: P. humanus corporis, Pediculus humanus corporis, Pediculus humanus humanus, human body lice, human body louse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0V9D3_PEDHC	E0V9Y7_PEDHC	E0V9D3	E0V9Y7	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.823
E0V9D3_PEDHC	E0VAF8_PEDHC	E0V9D3	E0VAF8	Cyclin H, putative (Fragment); Belongs to the cyclin family.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.998
E0V9D3_PEDHC	E0VC09_PEDHC	E0V9D3	E0VC09	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.773
E0V9D3_PEDHC	E0VC41_PEDHC	E0V9D3	E0VC41	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Uncharacterized protein.	0.876
E0V9D3_PEDHC	E0VCF0_PEDHC	E0V9D3	E0VCF0	Cyclin H, putative (Fragment); Belongs to the cyclin family.	TFIIH basal transcription factor complex subunit, putative.	0.989
E0V9D3_PEDHC	E0VCI8_PEDHC	E0V9D3	E0VCI8	Cyclin H, putative (Fragment); Belongs to the cyclin family.	DNA excision repair protein haywire, putative.	0.987
E0V9D3_PEDHC	E0VEZ5_PEDHC	E0V9D3	E0VEZ5	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.695
E0V9D3_PEDHC	E0VFY0_PEDHC	E0V9D3	E0VFY0	Cyclin H, putative (Fragment); Belongs to the cyclin family.	General transcription factor IIH subunit.	0.974
E0V9D3_PEDHC	E0VGD5_PEDHC	E0V9D3	E0VGD5	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.829
E0V9D3_PEDHC	E0VGZ1_PEDHC	E0V9D3	E0VGZ1	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.468
E0V9D3_PEDHC	E0VIK4_PEDHC	E0V9D3	E0VIK4	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Predicted protein.	0.993
E0V9D3_PEDHC	E0VJL5_PEDHC	E0V9D3	E0VJL5	Cyclin H, putative (Fragment); Belongs to the cyclin family.	TAF domain-containing protein.	0.706
E0V9D3_PEDHC	E0VKS5_PEDHC	E0V9D3	E0VKS5	Cyclin H, putative (Fragment); Belongs to the cyclin family.	TFIIH basal transcription factor complex TTD-A subunit, putative.	0.725
E0V9D3_PEDHC	E0VNE5_PEDHC	E0V9D3	E0VNE5	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor iib, putative.	0.928
E0V9D3_PEDHC	E0VNT9_PEDHC	E0V9D3	E0VNT9	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Trf2 protein, putative.	0.762
E0V9D3_PEDHC	E0VPI1_PEDHC	E0V9D3	E0VPI1	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.763
E0V9D3_PEDHC	E0VPQ2_PEDHC	E0V9D3	E0VPQ2	Cyclin H, putative (Fragment); Belongs to the cyclin family.	WD-repeat protein, putative.	0.695
E0V9D3_PEDHC	E0VQA4_PEDHC	E0V9D3	E0VQA4	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Trf2 protein, putative.	0.662
E0V9D3_PEDHC	E0VQC8_PEDHC	E0V9D3	E0VQC8	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Transcription initiation factor TFIID subunit, putative.	0.814
E0V9D3_PEDHC	E0VRJ7_PEDHC	E0V9D3	E0VRJ7	Cyclin H, putative (Fragment); Belongs to the cyclin family.	Mitogen-activated protein kinase ERK-A, putative; Belongs to the protein kinase superfamily.	0.974