16 items (Pediculus humanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E0V9P7_PEDHC	Uncharacterized protein. (441 aa)
	E0VAA3_PEDHC	Plasminogen activator inhibitor 1 RNA-binding protein, putative. (464 aa)
	E0VAT3_PEDHC	DEAD box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (579 aa)
	E0VDI2_PEDHC	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1783 aa)
	E0VL41_PEDHC	DEAD box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (678 aa)
	E0VQ15_PEDHC	Chromo domain protein, putative. (1795 aa)
	E0VRA1_PEDHC	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (961 aa)
	E0VTG4_PEDHC	ELL domain-containing protein. (51 aa)
	E0VXB6_PEDHC	Poly [ADP-ribose] polymerase. (992 aa)
	E0W0Y1_PEDHC	DEAD box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (610 aa)
	E0VYB8_PEDHC	BZIP domain-containing protein. (681 aa)
	E0W239_PEDHC	TFIIH basal transcription factor complex helicase subunit, putative. (747 aa)
	E0W2T7_PEDHC	RNA-binding protein squid, putative. (295 aa)
	E0VYW5_PEDHC	DEAD box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (675 aa)
	E0W0Y0_PEDHC	DEAD box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (755 aa)
	E0W4A9_PEDHC	RNA-binding protein squid, putative. (272 aa)

Your Current Organism:

Pediculus humanus

NCBI taxonomy Id: 121224
Other names: P. humanus corporis, Pediculus humanus corporis, Pediculus humanus humanus, human body lice, human body louse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0V9P7_PEDHC	E0VDI2_PEDHC	E0V9P7	E0VDI2	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.598
E0VDI2_PEDHC	E0V9P7_PEDHC	E0VDI2	E0V9P7	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.598
E0VDI2_PEDHC	E0VQ15_PEDHC	E0VDI2	E0VQ15	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Chromo domain protein, putative.	0.564
E0VDI2_PEDHC	E0VTG4_PEDHC	E0VDI2	E0VTG4	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	ELL domain-containing protein.	0.598
E0VQ15_PEDHC	E0VDI2_PEDHC	E0VQ15	E0VDI2	Chromo domain protein, putative.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.564
E0VRA1_PEDHC	E0VXB6_PEDHC	E0VRA1	E0VXB6	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]	Poly [ADP-ribose] polymerase.	0.570
E0VTG4_PEDHC	E0VDI2_PEDHC	E0VTG4	E0VDI2	ELL domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.598
E0VXB6_PEDHC	E0VRA1_PEDHC	E0VXB6	E0VRA1	Poly [ADP-ribose] polymerase.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]	0.570
E0VXB6_PEDHC	E0W239_PEDHC	E0VXB6	E0W239	Poly [ADP-ribose] polymerase.	TFIIH basal transcription factor complex helicase subunit, putative.	0.643
E0W239_PEDHC	E0VXB6_PEDHC	E0W239	E0VXB6	TFIIH basal transcription factor complex helicase subunit, putative.	Poly [ADP-ribose] polymerase.	0.643
E0W2T7_PEDHC	E0W4A9_PEDHC	E0W2T7	E0W4A9	RNA-binding protein squid, putative.	RNA-binding protein squid, putative.	0.900
E0W4A9_PEDHC	E0W2T7_PEDHC	E0W4A9	E0W2T7	RNA-binding protein squid, putative.	RNA-binding protein squid, putative.	0.900