11 items (Pediculus humanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E0VSW1_PEDHC	Clustered-asparagine-rich protein, putative. (503 aa)
	E0VTG4_PEDHC	ELL domain-containing protein. (51 aa)
	E0VWL7_PEDHC	Cyclic AMP-dependent transcription factor ATF-6 alpha, putative. (410 aa)
	E0V9P7_PEDHC	Uncharacterized protein. (441 aa)
	E0VX91_PEDHC	EAF domain-containing protein. (335 aa)
	E0VLM8_PEDHC	Predicted protein. (1570 aa)
	E0VRZ8_PEDHC	Hypoxia-inducible factor 1 alpha inhibitor, putative. (343 aa)
	E0VDD5_PEDHC	Impact, putative. (228 aa)
	E0W3J5_PEDHC	Uncharacterized protein. (180 aa)
	E0W4E4_PEDHC	Ubiquitously transcribed X chromosome tetratricopeptide repeat protein, putative. (1230 aa)
	E0W2Z2_PEDHC	Membrane-bound transcription factor site 2 protease, putative. (418 aa)

Your Current Organism:

Pediculus humanus

NCBI taxonomy Id: 121224
Other names: P. humanus corporis, Pediculus humanus corporis, Pediculus humanus humanus, human body lice, human body louse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0V9P7_PEDHC	E0VX91_PEDHC	E0V9P7	E0VX91	Uncharacterized protein.	EAF domain-containing protein.	0.912
E0VTG4_PEDHC	E0VX91_PEDHC	E0VTG4	E0VX91	ELL domain-containing protein.	EAF domain-containing protein.	0.897
E0VWL7_PEDHC	E0W2Z2_PEDHC	E0VWL7	E0W2Z2	Cyclic AMP-dependent transcription factor ATF-6 alpha, putative.	Membrane-bound transcription factor site 2 protease, putative.	0.890
E0VX91_PEDHC	E0V9P7_PEDHC	E0VX91	E0V9P7	EAF domain-containing protein.	Uncharacterized protein.	0.912
E0VX91_PEDHC	E0VTG4_PEDHC	E0VX91	E0VTG4	EAF domain-containing protein.	ELL domain-containing protein.	0.897
E0W2Z2_PEDHC	E0VWL7_PEDHC	E0W2Z2	E0VWL7	Membrane-bound transcription factor site 2 protease, putative.	Cyclic AMP-dependent transcription factor ATF-6 alpha, putative.	0.890