11 items (Pediculus humanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E0VMC4_PEDHC	RING finger protein, putative. (390 aa)
	E0VFF4_PEDHC	Uncharacterized protein. (1341 aa)
	E0VUG0_PEDHC	Uncharacterized protein. (345 aa)
	E0VTK9_PEDHC	Negative elongation factor A, putative. (546 aa)
	E0VS63_PEDHC	Transcription elongation factor SPT5. (1122 aa)
	E0W2T5_PEDHC	Lupus la ribonucleoprotein, putative. (527 aa)
	E0VP16_PEDHC	USP domain-containing protein; Belongs to the peptidase C19 family. (1009 aa)
	E0V9I1_PEDHC	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (116 aa)
	E0VDW0_PEDHC	Uncharacterized protein. (574 aa)
	E0VZW3_PEDHC	Negative elongation factor D, putative. (580 aa)
	E0W480_PEDHC	Negative elongation factor E, putative. (273 aa)

Your Current Organism:

Pediculus humanus

NCBI taxonomy Id: 121224
Other names: P. humanus corporis, Pediculus humanus corporis, Pediculus humanus humanus, human body lice, human body louse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0V9I1_PEDHC	E0VDW0_PEDHC	E0V9I1	E0VDW0	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Uncharacterized protein.	0.918
E0V9I1_PEDHC	E0VS63_PEDHC	E0V9I1	E0VS63	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Transcription elongation factor SPT5.	0.998
E0V9I1_PEDHC	E0VTK9_PEDHC	E0V9I1	E0VTK9	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Negative elongation factor A, putative.	0.872
E0V9I1_PEDHC	E0VZW3_PEDHC	E0V9I1	E0VZW3	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Negative elongation factor D, putative.	0.881
E0V9I1_PEDHC	E0W480_PEDHC	E0V9I1	E0W480	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	Negative elongation factor E, putative.	0.913
E0VDW0_PEDHC	E0V9I1_PEDHC	E0VDW0	E0V9I1	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.918
E0VDW0_PEDHC	E0VS63_PEDHC	E0VDW0	E0VS63	Uncharacterized protein.	Transcription elongation factor SPT5.	0.957
E0VDW0_PEDHC	E0VTK9_PEDHC	E0VDW0	E0VTK9	Uncharacterized protein.	Negative elongation factor A, putative.	0.983
E0VDW0_PEDHC	E0VZW3_PEDHC	E0VDW0	E0VZW3	Uncharacterized protein.	Negative elongation factor D, putative.	0.987
E0VDW0_PEDHC	E0W480_PEDHC	E0VDW0	E0W480	Uncharacterized protein.	Negative elongation factor E, putative.	0.983
E0VFF4_PEDHC	E0VS63_PEDHC	E0VFF4	E0VS63	Uncharacterized protein.	Transcription elongation factor SPT5.	0.487
E0VS63_PEDHC	E0V9I1_PEDHC	E0VS63	E0V9I1	Transcription elongation factor SPT5.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.998
E0VS63_PEDHC	E0VDW0_PEDHC	E0VS63	E0VDW0	Transcription elongation factor SPT5.	Uncharacterized protein.	0.957
E0VS63_PEDHC	E0VFF4_PEDHC	E0VS63	E0VFF4	Transcription elongation factor SPT5.	Uncharacterized protein.	0.487
E0VS63_PEDHC	E0VTK9_PEDHC	E0VS63	E0VTK9	Transcription elongation factor SPT5.	Negative elongation factor A, putative.	0.958
E0VS63_PEDHC	E0VZW3_PEDHC	E0VS63	E0VZW3	Transcription elongation factor SPT5.	Negative elongation factor D, putative.	0.921
E0VS63_PEDHC	E0W480_PEDHC	E0VS63	E0W480	Transcription elongation factor SPT5.	Negative elongation factor E, putative.	0.924
E0VTK9_PEDHC	E0V9I1_PEDHC	E0VTK9	E0V9I1	Negative elongation factor A, putative.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.872
E0VTK9_PEDHC	E0VDW0_PEDHC	E0VTK9	E0VDW0	Negative elongation factor A, putative.	Uncharacterized protein.	0.983
E0VTK9_PEDHC	E0VS63_PEDHC	E0VTK9	E0VS63	Negative elongation factor A, putative.	Transcription elongation factor SPT5.	0.958